Assays

3 Assays visible to you, out of a total of 16

TANDEM MASS SPECTROMETRY (GC) Xcalibur GUI

Source
Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment Feature
acidiphilium_acidithrix_sup_2 whole_organism Acidiphilium C61 whole culture fresh n/a n/a n/a Acidithrix supernatant
acidiphilium_acidithrix_sup_1 whole_organism Acidiphilium C61
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Contributor: Maria Sorokina

Assay type: Metabolomics

Technology type: Gas Chromatography Mass Spectrometry

Snapshots: No snapshots

Experiment Design: growth_condition_design, co-expression_design
Experimental Factor: Compound, Organism, Strain
Experimental Factor Type: compound, organism, strain_or_line
Quality Control Type: technical_replicate, biological_replicate

Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment
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Contributor: Maria Sorokina

Assay type: Metabolomics

Technology type: Liquid Chromatography Mass Spectrometry

Snapshots: No snapshots

RNA-seq We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.

Experiment Design:
...

Contributor: Maria Sorokina

Assay type: RNA-seq

Technology type: Sequencing by synthesis (Illumina)

Snapshots: No snapshots

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