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Sticking together: Inter-species aggregation of bacteria isolated from iron snow iscontrolled by chemical signaling
SEEK ID: https://data.chembiosys.de/studies/7
Projects: ChemBioSys I
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Experimentalists: Küsel Kirsten kirsten.kuesel@uni-jena.de Friedrich Schiller University Jena Institute of Ecology PI Cooper Rebecca E n/a Friedrich Schiller University Jena Institute of Ecology investigator Lu Shipeng n/a Friedrich Schiller University Jena Institute of Ecology investigator Mori Jiro F n/a Friedrich Schiller University Jena Institute of Ecology investigator Pohnert Georg n/a Friedrich Schiller University Jena Institute of Inorganic and Analytical Chemistry PI Ueberschaar Nico n/a Friedrich Schiller University Jena Institute of Inorganic and Analytical Chemistry investigator
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Created: 27th Nov 2018 at 12:51
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Projects: A1, A2, A4, Associated project 1, Associated project 2, B05, B1, B2, B3, B4, B6, C2, C3, C5, INF, Total ChemBioSys, Z01, Z02, A3, ChemBioSys I, RDM training, C1, A06
Institutions: Friedrich Schiller University Jena (FSU), Institute for Inorganic and Analytical Chemistry
Roles: Postdoc
We investigated the role of chemical signaling between two co-occurring bacteria that each make up more than 10% of the community in iron-rich lakes aggregates (iron snow) by comparative metagenomics and propose a model that shows rapid iron snow formation and ultimately energy transfer from the photic zone to deeper water layers are controlled via a chemically mediated interplay.
Snapshots: No snapshots
TANDEM MASS SPECTROMETRY (GC) Xcalibur GUI
Source
Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment Feature
acidiphilium_acidithrix_sup_2 whole_organism Acidiphilium C61 whole culture fresh n/a n/a n/a Acidithrix supernatant
acidiphilium_acidithrix_sup_1 whole_organism Acidiphilium C61
...
Submitter: Maria Sorokina
Assay type: Metabolomics
Technology type: Gas Chromatography Mass Spectrometry
Snapshots: No snapshots
Investigation: Sticking together: Inter-species aggregation of...
Study: Sticking together: Inter-species aggregation of...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Experiment Design: growth_condition_design, co-expression_design
Experimental Factor: Compound, Organism, Strain
Experimental Factor Type: compound, organism, strain_or_line
Quality Control Type: technical_replicate, biological_replicate
Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment
...
Submitter: Maria Sorokina
Assay type: Metabolomics
Technology type: Liquid Chromatography Mass Spectrometry
Snapshots: No snapshots
Investigation: Sticking together: Inter-species aggregation of...
Study: Sticking together: Inter-species aggregation of...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Abstract (Expand)
Authors: J. F. Mori, N. Ueberschaar, S. Lu, R. E. Cooper, G. Pohnert, K. Kusel
Date Published: 1st Feb 2017
Publication Type: Not specified
PubMed ID: 28140394
Citation: ISME J. 2017 May;11(5):1075-1086. doi: 10.1038/ismej.2016.186. Epub 2017 Jan 31.