SEEK ID: https://data.chembiosys.de/people/97
Location: Germany
ORCID: Not specified
Joined: 13th Jun 2018
Expertise: Not specified
Tools: Not specified
Related items
- Projects (22)
- Institutions (1)
- Investigations (2+1)
- Studies (2+1)
- Assays (3+1)
- Data files (1+8)
- Publications (4)
- Documents (0+2)
Thiopeptide Signals in Actinomycete Communities
Public web page: Not specified
Chemical Factors Structuring Gut Microbial Communities of Insects
Public web page: Not specified
Stimuli-Responsive Microcapsules for Transport, Controlled Delivery and Release of Metal Ions and Organic
Public web page: Not specified
Organisms: Serpula lacrymans, Paxillus involutus, Aspergillus nidulans
Algicidal Bacteria in Plankton Communities: Resistance, Lysis and Heterotrophy
Public web page: Not specified
Organisms: Chaetoceros didymus, Kordia algicida, Skeletonema costatum
We investigated the role of chemical signaling between two co-occurring bacteria that each make up more than 10% of the community in iron-rich lakes aggregates (iron snow) by comparative metagenomics and propose a model that shows rapid iron snow formation and ultimately energy transfer from the photic zone to deeper water layers are controlled via a chemically mediated interplay.
We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
Submitter: Maria Sorokina
Studies: Defining the transcriptional landscape of Candida glabrata by RNA-Seq
Assays: Defining the transcriptional landscape of Candida glabrata by RNA-Seq
Snapshots: No snapshots
Submitter: Maria Sorokina
Investigation: Sticking together: Inter-species aggregation of...
Assays: GC-MS: Sticking together: Inter-species aggregation of bacteria isolated..., LC-MS: Sticking together: Inter-species aggregation of bacteria isolated...
Snapshots: No snapshots
We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
Submitter: Maria Sorokina
Investigation: Defining the transcriptional landscape of Candi...
Assays: Defining the transcriptional landscape of Candida glabrata by RNA-Seq
Snapshots: No snapshots
RNA-seq We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
Experiment Design: ...
Submitter: Maria Sorokina
Assay type: RNA-seq
Technology type: Sequencing by synthesis (Illumina)
Investigation: Defining the transcriptional landscape of Candi...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Experiment Design: growth_condition_design, co-expression_design Experimental Factor: Compound, Organism, Strain Experimental Factor Type: compound, organism, strain_or_line Quality Control Type: technical_replicate, biological_replicate
Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment ...
Submitter: Maria Sorokina
Assay type: Metabolomics
Technology type: Liquid Chromatography Mass Spectrometry
Investigation: Sticking together: Inter-species aggregation of...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
TANDEM MASS SPECTROMETRY (GC) Xcalibur GUI
Source Specimen Material Type Organism Strain or Line Organism Part Organism Status Sex Age Age Time Unit Sampling Time Point Sampling Time Point Unit Temperature Temperature Unit pH Atmosphere Compound Media Nutrients Fold Change Assignment Name Fold Change Assignment Feature acidiphilium_acidithrix_sup_2 whole_organism Acidiphilium C61 whole culture fresh n/a n/a n/a Acidithrix supernatant acidiphilium_acidithrix_sup_1 whole_organism Acidiphilium C61 ...
Submitter: Maria Sorokina
Assay type: Metabolomics
Technology type: Gas Chromatography Mass Spectrometry
Investigation: Sticking together: Inter-species aggregation of...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Verticillium dahliae is a soil-borne vascular pathogen that causes severe wilt symptoms in a wide range of plants. Co-culture of the fungus with Arabidopsis roots for 24 hours induces many changes in the gene expression profiles of both partners, even before defense-related phytohormone levels are induced in the plant. Both partners reprogram sugar and amino acid metabolism, activate genes for signal perception and transduction, and induce defense and stress responsive genes. Furthermore, analysis ...
Creators: Maria Sorokina, Sandra Scholz
Submitter: Maria Sorokina
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract (Expand)
Authors: S. S. Scholz, W. Schmidt-Heck, R. Guthke, A. C. U. Furch, M. Reichelt, J. Gershenzon, R. Oelmuller
Date Published: 3rd Mar 2018
Publication Type: Journal
PubMed ID: 29497409
Citation: Front Microbiol. 2018 Feb 13;9:217. doi: 10.3389/fmicb.2018.00217. eCollection 2018.
Abstract (Expand)
Authors: J. Linde, S. Duggan, M. Weber, F. Horn, P. Sieber, D. Hellwig, K. Riege, M. Marz, R. Martin, Reinhard Guthke, O. Kurzai
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 25586221
Citation: Nucleic Acids Res. 2015 Feb 18;43(3):1392-406. doi: 10.1093/nar/gku1357. Epub 2015 Jan 13.
Abstract (Expand)
Authors: J. F. Mori, N. Ueberschaar, S. Lu, R. E. Cooper, G. Pohnert, K. Kusel
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 28140394
Citation: ISME J. 2017 May;11(5):1075-1086. doi: 10.1038/ismej.2016.186. Epub 2017 Jan 31.
Abstract (Expand)
Authors: N. Meyer, J. Rettner, M. Werner, O. Werz, G. Pohnert
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 30518148
Citation: Mar Drugs. 2018 Dec 4;16(12). pii: md16120486. doi: 10.3390/md16120486.