- Home
- Investigations Index
- Defining the transcriptional landscape of Candida glabrata by RNA-Seq
We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
SEEK ID: https://data.chembiosys.de/investigations/10
Projects: ChemBioSys I
Export PNG

Views: 214
Created: 27th Nov 2018 at 11:00
Related items
Projects: A1, A2, A4, Associated project 1, Associated project 2, B05, B1, B2, B3, B4, B6, C2, C3, C5, INF, Total ChemBioSys, Z01, Z02, A3, ChemBioSys I, RDM training, C1, A06
Institutions: Friedrich Schiller University Jena (FSU), Institute for Inorganic and Analytical Chemistry
Roles: Postdoc
We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
Person responsible: Maria Sorokina
Snapshots: No snapshots
RNA-seq We study the transcriptional landscape of C. glabrata and identify differentially expressed genes between pH4 and ph8 as well as between nitrosative stress (GSNO) treatment and controll. Candida glabrata was grown in standard nutrient-rich medium, ph4, ph8 and in GSNO conditions. Paired-end and strand-specific RNA-Seq was performed on three biological replicates after PolyA filtering. A fourth replicate without filtering was sequenced single-end and not strand-specific.
Experiment Design:
...
Submitter: Maria Sorokina
Assay type: RNA-seq
Technology type: Sequencing by synthesis (Illumina)
Snapshots: No snapshots
Investigation: Defining the transcriptional landscape of Candi...
Study: Defining the transcriptional landscape of Candi...
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Abstract (Expand)
Authors: J. Linde, S. Duggan, M. Weber, F. Horn, P. Sieber, D. Hellwig, K. Riege, M. Marz, R. Martin, Reinhard Guthke, O. Kurzai
Date Published: No date defined
Publication Type: Not specified
PubMed ID: 25586221
Citation: Nucleic Acids Res. 2015 Feb 18;43(3):1392-406. doi: 10.1093/nar/gku1357. Epub 2015 Jan 13.